PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 132aa    MW: 14620.5 Da    PI: 7.2063
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.56.6e-4512110199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++dCv+apyfp e+pkkfanvh++FGasnv+k+l+++++++reda++sl+yeAear+rdPvyG+vg i+ lq+q+  l++el+
  XP_013594213.1  12 PCAACKFLRRKCTSDCVFAPYFPPEEPKKFANVHRIFGASNVSKILQEVEPHQREDAVNSLAYEAEARLRDPVYGCVGAISVLQRQVLGLQSELE 106
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_013594213.1 107 ETNA 110
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.5611112IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSSSYSNYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPKK FANVHRIFGA SNVSKILQEV  60
EPHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG LQSELEETNA DIMRYASCLG  120
GETTSVYGAR RG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594213.12e-95PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q35e-86LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A0D3DBD02e-95A0A0D3DBD0_BRAOL; Uncharacterized protein
STRINGBra025294.1-P1e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-87LOB domain-containing protein 25